.. _summary_links:

HTML Summary Links
####################

|popy| outputs :term:`HTML` summaries of :ref:`fit_scripts<fit_script>`, :ref:`gen_scripts<gen_script>` and :ref:`tut_scripts<tut_script>`. 

This page lists the summary outputs for **all** example scripts used in this documentation. Browse this list to see the variety of |pkpd| modelling available in |popy|.

Note, each summary contains a link to the original script. |eg| A tut summary contains a link to the original :ref:`tut_script`, so you can download each script and re-run all of the examples on this page using your own installation of |popy|. You can also adapt each example script to your own |pkpd| modelling requirements.


.. _example_summaries: 

Example Summaries
===================

.. include:: /_autogen/summ_links/fit_example1_fit.txt
.. include:: /_autogen/summ_links/tut_example1_tut.txt
.. include:: /_autogen/summ_links/builtin_fit_example_fit.txt
.. include:: /_autogen/summ_links/builtin_gen_example_gen.txt

.. only:: browser

    .. note:: Example Data: :download:`synthetic_data.csv </_autogen/quick_start/builtin_gen_example/builtin_gen_example.pyml_output/gen/synthetic_data.csv>` 
    
.. only:: document

    .. note:: Example Data: :extdoc_link:`_autogen/quick_start/builtin_gen_example/builtin_gen_example.pyml_output/gen/synthetic_data.csv`

.. include:: /_autogen/summ_links/builtin_tut_example_tut.txt

    
.. _indiv_model_summaries: 

Individual Model Summaries
==============================

.. include:: /_autogen/summ_links/elim_ke_example_tut.txt
.. include:: /_autogen/summ_links/elim_v_example_tut.txt
.. include:: /_autogen/summ_links/elim_cl_example_tut.txt

.. include:: /_autogen/summ_links/iv_one_cmp_cl_tut.txt
.. include:: /_autogen/summ_links/dep_one_cmp_cl_tut.txt
.. include:: /_autogen/summ_links/iv_two_cmp_cl_tut.txt
.. include:: /_autogen/summ_links/dep_two_cmp_cl_tut.txt
.. include:: /_autogen/summ_links/iv_three_cmp_cl_tut.txt
.. include:: /_autogen/summ_links/dep_three_cmp_cl_tut.txt

.. include:: /_autogen/summ_links/bolus_dosing_tut.txt
.. include:: /_autogen/summ_links/inf_dur_dosing_tut.txt
.. include:: /_autogen/summ_links/inf_rate_dosing_tut.txt
.. include:: /_autogen/summ_links/gamma_dosing_tut.txt
.. include:: /_autogen/summ_links/weibull_dosing_tut.txt
.. include:: /_autogen/summ_links/bolus_dosing_repeated_tut.txt
.. include:: /_autogen/summ_links/inf_dur_dosing_repeated_tut.txt
.. include:: /_autogen/summ_links/inf_rate_dosing_repeated_tut.txt
.. include:: /_autogen/summ_links/gamma_dosing_repeated_tut.txt
.. include:: /_autogen/summ_links/weibull_dosing_repeated_tut.txt

.. include:: /_autogen/summ_links/ao_gen_ao_fit_tut.txt
.. include:: /_autogen/summ_links/po_gen_po_fit_tut.txt
.. include:: /_autogen/summ_links/pa_gen_pa_fit_tut.txt
.. include:: /_autogen/summ_links/pa_gen_pa_fit_badvar_fit.txt

.. include:: /_autogen/summ_links/circ_sin_tut.txt
.. include:: /_autogen/summ_links/direct_pd_tut.txt
.. include:: /_autogen/summ_links/direct_pd_simul_tut.txt
 
.. include:: /_autogen/summ_links/d1cmp_ka_stderr_tut.txt
.. include:: /_autogen/summ_links/d1cmp_ka_v_stderr_tut.txt
.. include:: /_autogen/summ_links/d1cmp_ka_cl_stderr_tut.txt
.. include:: /_autogen/summ_links/d1cmp_v_cl_stderr_tut.txt
.. include:: /_autogen/summ_links/d1cmp_ka_v_cl_stderr_tut.txt
    
    
.. _pop_model_summaries: 

Population Model Summaries
============================

.. include:: /_autogen/summ_links/d1cmp_cl_isv_tut.txt
.. include:: /_autogen/summ_links/d1cmp_cl_isv_01_tut.txt
.. include:: /_autogen/summ_links/d1cmp_cl_isv_05_tut.txt
.. include:: /_autogen/summ_links/d1cmp_cl_isv_naive_tut.txt

.. include:: /_autogen/summ_links/d1cmp_cl_iov_tut.txt
.. include:: /_autogen/summ_links/d1cmp_cl_iov_05_tut.txt
.. include:: /_autogen/summ_links/d1cmp_cl_iov_naive_tut.txt

.. include:: /_autogen/summ_links/gen_indep_fit_indep_tut.txt
.. include:: /_autogen/summ_links/gen_diag_fit_diag_tut.txt
.. include:: /_autogen/summ_links/gen_diag_fit_full_tut.txt
.. include:: /_autogen/summ_links/gen_full_fit_diag_tut.txt
.. include:: /_autogen/summ_links/gen_full_fit_full_tut.txt

.. include:: /_autogen/summ_links/weight_covariate_tut.txt
.. include:: /_autogen/summ_links/blq_pk_tut.txt
.. include:: /_autogen/summ_links/blq_pk_norm_fit_fit.txt
.. include:: /_autogen/summ_links/blq_pk_norm_fit_half_fit.txt
.. include:: /_autogen/summ_links/blq_pk_norm_fit_ignore_fit.txt
